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Preheat the oven to 350 degrees.
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Spray the muffin tin with cooking spray.
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Wrap the tortillas into a paper towel and microwave on high for 30 seconds.
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Working quickly, work the tortillas into the muffin tins folding a few times on the side to maintain a cup shape.
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Put a heaping spoonful of refried beans on the bottoms of each cup.
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Top lightly with the salsa, just covering the beans.
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Crack an egg into each cup, and spoon a thin layer of salsa on top of the egg.
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Sprinkle cheese generously on each cup.
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Bake 15-20 minutes, taking it out of the oven when the egg whites are just set (the yolks should still be runny).
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Top with chopped cilantro and serve with hot sauce.